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Considering our findings, it can be concluded that the mitogenome of the California halibut, P. californicus, is 16,858 bp in length and contains 13 protein-coding genes, 22 tRNAs, 2 rRNAs, and the control region. The distribution and orientation of protein-coding genes, tRNAs, rRNAs, and the control region of P. californicus were very similar to those in mitogenomes of other flatfish species. The phylogenetic-tree analysis of the families in the order Pleuornectiformes (flatfish) was well resolved. The mitogenome of the California halibut, P. californicus, was most similar to that of the Japanese halibut, P. olivaceus. Further genetic work on this genus is needed, particularly for P. californicus.